Track Analysis

Turn tracking data into stoichiometry and diffusion coefficients. Look for colocalisation.

trackAnalyser - runs on a single cell containing one colour channel Inputs: spot array, segmentation mask for one cell, image file name, cell number and a parameter structure Outputs: trackArray containing stoichiometry, diffusion coefficient etc. and the corresponding spots

colocalisedTrackAnalyser - runs on a single cell containing 2 colour channels Inputs: spot arrays, segmentation mask for one cell, image file name, cell number and a parameter structure Outputs: trackArrays containing stoichiometry, diffusion coefficient etc. and the corresponding spots

sampleTrackAnalyser , sample2CTrackAnalyser and sampleMCTrackAnalyser show you how to loop the previous functions over whole data sets and then plot things with masterPlotin single, multi channel and multi compartment data.